Not bad.
As said before, for a second flash this is pretty good.
Gotta love the tenchu background music.
Some pointers on improving maybe:
-A better title screen (I mean, yellow? come on, at least make it ninja-ish like.. BLACK! :P)
-Some improvent on the timing of sounds (There was a part early in the beginning, that the gun fired but there was no sound.. so ya)
-Background of the environment instead of just one colour..
-Voice-acting maybe? (that would be cool..)
-And last but definitely not least, more action (baddies etc.)
Just some pointers, don't take em too serious if you know wht I mean.. Well, anywayz..
Great job, keep it up..