The fairies!
I realized when Cherrina was taking care of Saria in the forest, right after the bought with Dark Link -- great idea to add him, by the way -- I noticed the color scheme of Navi, Lert, and -- crap, forgot the name of Saria's fairy. Anyway, I liked that you made them red, blue, and green. Additionally, amazing job with the eyes, especially when Link starts remembering his past.