Mmkay, I notice a few people have questions about Alphazet so here goes:
@FrostbiteX: Alphazet first appears in the TTA Movie (which is NOT on NG, it WAS on tta.fireball20xl.com, along with the 3 other opening sequences, but that part of the site no longer exists from what I can tell). They use him to defeat the virus, Flux (who is referenced in the Season 2 finale).
@blazingtornado1: Alpha and Zetto DO work sort of like that. Basically when their characters are merged, so are their consciousnesses, allowing Alphazet to take combined feedback from the two of them. Essentially he has BOTH of their thought processes to draw from, which helps to explain how he can make such complex and origional moves (twice the thought process = twice the reaction and planning speed).
I plan on checking youtube later for the missing animations but I fear my efforts will meet with failure. Either way, hope this helps some of you guys understand a bit better why it doesn't seem like everything is here or how some things seem glossed over.
TTA and TOME ftw.