Wow.
Awesomeness. Loved it.
Things I'd have liked to do in this one:
1) Fight Link using the battle sequence thing.
Well, that's it.
Things to think about for the next one:
1) Add Alia or Iris as playable characters. (From Megaman X, in case you didn't already know)
2) Put some less important battles in it. Like a fight with a Maverick or a drone robot. it may take longer, but it would be cool.
Keep on going.