Great writing! Good animation, okay sound.
Overall, I enjoyed this. Your writing (the story background and script) is very good. The animation/art is also quite good for online Flash animations, but not so much on an absolute standard - your movement tends to feel rather stiff. For example, your walking animations are often very unnatural - the upper body doesn't remain so stationary. There were also a few figures that were drawn awkwardly e.g. due to perspective - notably in the elevator, with the camera above the character at an angle. On the other hand, I noticed some of the facial expressions were quite effective.
As for the sound, your voice clips were very low-quality - probably due to the microphones and audio interface (sound card) used by your voice-actors, and maybe your Flash compression settings, depending. They were also very inconsistent in their quality - e.g. the two officials were very distorted and "distant" compared to the girl. It was a bit jarring to hear that, and it was a bit difficult to understand some characters.
As for the story, I'm not sure if it's your exposition or just that I wasn't paying enough attention (or read the intro text carefully enough), but I had trouble keeping track of the characters and their allegiances.
Overall, though, I hope you keep working on these kinds of projects. As a writer and storyteller, you're quite good; as an animator, I think you have a lot of potential, and regardless, this movie was very enjoyable to watch even if it's not Ghibli-quality animation =P