I know it's old, but I must say, it needs work. Too bad you lost the project file! :(
Right at the beginning, I didn't like the timing of the triplets, they sounded wonky. Some of the notes are wrong as well, which drove me insane, since I loved this game so much and listened to this song so much back in the day. lol
0:57 is pretty damn cool! Sounds like you took the same pattern though and copied it into another synth. So all the same wrong notes are there >.<
The arp at 1:47 didn't fit very well into the mix, it was quite loud and took over the other sounds, if you EQed the lows out of it a bit more, it may have worked better.
It's also quite short, not a very conclusive outro either.
Mind you, everything sounds quite crisp and there's no distortion. :D
Maybe you should completely remake it, I see a lot of promise in this, the wrong notes can/must be fixed!
Keep at it!