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You mean transfer your save file or... what?
I don't think you can transfer your save file. On Newgrounds, your save files for games are stored under a cookie called uploads.ungrounded.net. As far as I know, you cannot paste any Kongregate data into it and have it work.
Since the Kongregate and Newgrounds versions of the game don't seem to be identical, the savefiles might also be different. If you want to give it a try though, open up your %APPDATA% folder, navigate to Roaming > Macromedia > Flash Player > #Shared Objects, find the Kongregate folder and copy the EBF4 save folder (it shouldn't be too hard to find), copy it, play EBF4 on NG, navigate to uploaded.newgrounds.com (as Auz mentioned, find the portal ID folder, and within that the game folder, and move your KG save there. The files may not be compatible/recognized, but if it does that's the way to go. Also be sure to have your browser closed while you move the saves.